PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005239G0070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 238aa    MW: 25922.9 Da    PI: 9.8802
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005239G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-17100149155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PH01005239G0070 100 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 149
                      78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-16100158IPR016177DNA-binding domain
PfamPF008471.9E-9100149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17101157IPR001471AP2/ERF domain
SMARTSM003809.9E-32101163IPR001471AP2/ERF domain
PROSITE profilePS5103217.899101157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MWDLNDSPAA EGAPALSPSA GDSGASSSSA AAVVEIPDDG DDVSAAAAYA VVTRQFFPPA  60
AGGEATSGNA RAEWLQLAGA PPPAAAAAKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  120
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFSLED YEDMKQMTNL TKEEFVHVLR  180
RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYHPLP LQSPRVSFFS HHFPRPSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0981090.0FP098109.1 Phyllostachys edulis cDNA clone: bphylf048j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580693.16e-85PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotP479275e-77AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM5AA088e-91M5AA08_TRIDC; TaAP2-B
TrEMBLM5AB338e-91M5AB33_AEGSP; TaAP2-S
STRINGBRADI5G24100.12e-84(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-67AP2 family protein